species:   Rhsol
pid:       PID0581
parent:    Rhi-milR-21
paralog:   
locus:     KB317742.1:112670-112782
matures:   ['AGCGAGGUAGAACAAGUAAGUCC', 'UCUUGCAUUUGCCUUGGAAA']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317742.1:112670-112782

0 out of bounds
107 alignments
68 proper strand
36 stranded perfect matches

          ************************                                 ***************************                   
UAAAAAGAAUUUCUCUUGCAUUUGCCUUGGAAAAGAGGUCUUUUGUAUUUAAUGGACUUCAUAACCCGAUAGCGAGGUAGAACAAGUAAGUCCAUAGUUUUUUUUAACACCUG
(((((((((((...(((((.(((((((((.....(((((((.(((....))).)))))))............)))))))))....))))).....))))))))))).......
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=2 c
-------------UCUUGCAUUUGCCUUGGAAA-------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=11 ma
------------CUCUUGCAUUUGCCUUGGAAAA------------------------------------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------------------------CGAGGUAGAACAAGUAAGUCa-------------------- l=21 a=1 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCC-------------------- l=23 a=2 (c)
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCa-------------------- l=23 a=1 
----------------------------------------------------------------------AGCGAGGUAGAACAAGUAAGUCCA------------------- l=24 a=1 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGU---------------------- l=22 a=3 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUC--------------------- l=23 a=3 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCa-------------------- l=24 a=26 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCg-------------------- l=24 a=4 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCC-------------------- l=24 a=3 
---------------------------------------------------------------------UAGCGAGGUAGAACAAGUAAGUCCA------------------- l=25 a=11 (ma)
--------------------------------------------------------------------AUAGCGAGGUAGAACAAGUAAG----------------------- l=22 a=1 
--------------------------------------------------------------------AUAGCGAGGUAGAACAAGUAAGUC--------------------- l=24 a=2 
------------------------------------------------------------------CGAUAGCGAGGUAGAACAAGUA------------------------- l=22 a=3 
----------------------------------------------------------------CCCGAUAGCGAGGUAGAACAAGU-------------------------- l=23 a=1 
--------------------------------------------------------------AACCCGAUAGCGAGGUAGAACAAGUAAGU---------------------- l=29 a=1 
-------------------------------------------------------------UAACCCGAUAGCGAGGUAGAACA----------------------------- l=23 a=1 
-------------------------------------------------------------UAACCCGAUAGCGAGGUAGAACAAGUA------------------------- l=27 a=1 
-------------------------------------------------------------UAACCCGAUAGCGAGGUAGAACAAGUAA------------------------ l=28 a=1 
-------------------------------------------------------------UAACCCGAUAGCGAGGUAGAACAAGUAAG----------------------- l=29 a=1 
----------------------------------------------------UGGACUUCAUAACCCGAUAG----------------------------------------- l=20 a=1 

mb-01010
ax-1001001
ku-01
ss-101010101000
fn-101
